Bioconductor Functional enrichment

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clusterprofiler go enrichment functional enrichment

updated 6.2 years ago by Guangchuang Yu ★ 1.2k • written 6.2 years ago by Jack ▴ 20

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genesetenrichment functional enrichment enrichmentbrowser News

9.0 years ago Ludwig Geistlinger ▴ 70

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SPIA functional enrichment pathway topology pathway analysis bioconductor

9.5 years ago svlachavas ▴ 840

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Answer: XCMS Data Processing by James W. MacDonald 67k

There are three different ways to troubleshoot. You can run under the debugger, or wait until the error occurs and then do `traceback()` to…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

That's true. We haven't yet developed the Oarfish to tximeta pipeline yet. Can you say what functionality you need? Do you want to do test…

Comment: Error using useMart or useEnsembl by James W. MacDonald 67k

I hit Enter early on my original response - if you want to read the rest, please come to the support site.

Answer: Error using useMart or useEnsembl by James W. MacDonald 67k

The acid test is trying to load https://ensembl.org/biomart/martview in a browser. Which isn't happening right now, so you know for sure th…

Answer: Error in download.file for TCGAutils::symbolsToRanges by James W. MacDonald 67k

That's a valid URI, so it is likely that you just need more time for the download. You can do `options(timeout = 2000)` or some similarly l…

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Answer: Limma Interaction Effect with Covariates

A: Processing agilent data by limma

A: Linear regression in DESeq2

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